Workflow: Data2Services CWL workflow to convert CSV/TSV files with statements split, Vincent Emonet <vincent.emonet@gmail.com>
Fetched 2024-11-23 21:51:39 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| dataset | String | ||
| split_class_0 | String | ||
| split_class_1 | String | ||
| split_class_2 | String | ||
| split_class_3 | String | ||
| split_class_4 | String | ||
| split_class_5 | String | ||
| split_class_6 | String | ||
| split_class_7 | String | ||
| split_class_8 | String | ||
| split_class_9 | String | ||
| split_class_10 | String | ||
| split_class_11 | String | ||
| split_class_12 | String | ||
| split_class_13 | String | ||
| split_class_14 | String | ||
| split_class_15 | String | ||
| split_class_16 | String | ||
| split_class_17 | String | ||
| split_class_18 | String | ||
| split_class_19 | String | ||
| split_class_20 | String | ||
| split_class_21 | String | ||
| split_class_22 | String | ||
| split_class_23 | String | ||
| split_class_24 | String | ||
| split_class_25 | String | ||
| split_class_26 | String | ||
| split_class_27 | String | ||
| split_class_28 | String | ||
| split_class_29 | String | ||
| split_class_30 | String | ||
| split_class_31 | String | ||
| split_class_32 | String | ||
| split_class_33 | String | ||
| split_class_34 | String | ||
| split_class_35 | String | ||
| split_class_36 | String | ||
| split_class_37 | String | ||
| split_class_38 | String | ||
| split_class_39 | String | ||
| split_class_40 | String | ||
| split_class_41 | String | ||
| split_class_42 | String | ||
| split_class_43 | String | ||
| split_class_44 | String | ||
| input_data_jdbc | String | ||
| sparql_base_uri | String | ||
| split_property_0 | String | ||
| split_property_1 | String | ||
| split_property_2 | String | ||
| split_property_3 | String | ||
| split_property_4 | String | ||
| split_property_5 | String | ||
| split_property_6 | String | ||
| split_property_7 | String | ||
| split_property_8 | String | ||
| split_property_9 | String | ||
| split_delimiter_0 | String | ||
| split_delimiter_1 | String | ||
| split_delimiter_2 | String | ||
| split_delimiter_3 | String | ||
| split_delimiter_4 | String | ||
| split_delimiter_5 | String | ||
| split_delimiter_6 | String | ||
| split_delimiter_7 | String | ||
| split_delimiter_8 | String | ||
| split_delimiter_9 | String | ||
| split_property_10 | String | ||
| split_property_11 | String | ||
| split_property_12 | String | ||
| split_property_13 | String | ||
| split_property_14 | String | ||
| split_property_15 | String | ||
| split_property_16 | String | ||
| split_property_17 | String | ||
| split_property_18 | String | ||
| split_property_19 | String | ||
| split_property_20 | String | ||
| split_property_21 | String | ||
| split_property_22 | String | ||
| split_property_23 | String | ||
| split_property_24 | String | ||
| split_property_25 | String | ||
| split_property_26 | String | ||
| split_property_27 | String | ||
| split_property_28 | String | ||
| split_property_29 | String | ||
| split_property_30 | String | ||
| split_property_31 | String | ||
| split_property_32 | String | ||
| split_property_33 | String | ||
| split_property_34 | String | ||
| split_property_35 | String | ||
| split_property_36 | String | ||
| split_property_37 | String | ||
| split_property_38 | String | ||
| split_property_39 | String | ||
| split_property_40 | String | ||
| split_property_41 | String | ||
| split_property_42 | String | ||
| split_property_43 | String | ||
| split_property_44 | String | ||
| working_directory | String | ||
| split_delimiter_10 | String | ||
| split_delimiter_11 | String | ||
| split_delimiter_12 | String | ||
| split_delimiter_13 | String | ||
| split_delimiter_14 | String | ||
| split_delimiter_15 | String | ||
| split_delimiter_16 | String | ||
| split_delimiter_17 | String | ||
| split_delimiter_18 | String | ||
| split_delimiter_19 | String | ||
| split_delimiter_20 | String | ||
| split_delimiter_21 | String | ||
| split_delimiter_22 | String | ||
| split_delimiter_23 | String | ||
| split_delimiter_24 | String | ||
| split_delimiter_25 | String | ||
| split_delimiter_26 | String | ||
| split_delimiter_27 | String | ||
| split_delimiter_28 | String | ||
| split_delimiter_29 | String | ||
| split_delimiter_30 | String | ||
| split_delimiter_31 | String | ||
| split_delimiter_32 | String | ||
| split_delimiter_33 | String | ||
| split_delimiter_34 | String | ||
| split_delimiter_35 | String | ||
| split_delimiter_36 | String | ||
| split_delimiter_37 | String | ||
| split_delimiter_38 | String | ||
| split_delimiter_39 | String | ||
| split_delimiter_40 | String | ||
| split_delimiter_41 | String | ||
| split_delimiter_42 | String | ||
| split_delimiter_43 | String | ||
| split_delimiter_44 | String | ||
| sparql_tmp_graph_uri | String | ||
| sparql_input_graph_uri | String | ||
| sparql_triplestore_url | String | ||
| sparql_compute_hcls_path | String | ||
| sparql_insert_metadata_path | String | ||
| sparql_transform_queries_path | String | ||
| sparql_triplestore_repository | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step4-r2rml |
../../cwl/cwl-steps/run-r2rml.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step700-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step701-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step702-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step703-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step704-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step705-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step706-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step707-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step708-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step709-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step710-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step711-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step712-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step713-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step714-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step715-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step716-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step717-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step718-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step719-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step720-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step721-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step722-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step723-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step724-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step725-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step726-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step727-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step728-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step729-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step730-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step731-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step732-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step733-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step734-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step735-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step736-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step737-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step738-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step739-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step740-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step741-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step742-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step743-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step744-split |
../../cwl/cwl-steps/run-split-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step2-autor2rml |
../../cwl/cwl-steps/autor2rml.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step5-rdf-upload |
../../cwl/cwl-steps/rdf-upload-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step1-d2s-download |
../../cwl/cwl-steps/d2s-download.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step6-insert-metadata |
../../cwl/cwl-steps/execute-sparql-mapping-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step9-compute-hcls-stats |
../../cwl/cwl-steps/execute-sparql-mapping-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step3-generate-r2rml-config |
../../cwl/cwl-steps/generate-r2rml-config.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> | |
| step8-execute-transform-queries |
../../cwl/cwl-steps/execute-sparql-mapping-graphdb.cwl
(CommandLineTool)
|
Data2Services CWL workflow, Ammar Ammar <ammar257ammar@gmail.com> |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| rdf_upload_logs | File | ||
| execute_split_logs | File | ||
| nquads_file_output | File | ||
| download_dataset_logs | File | ||
| r2rml_trig_file_output | File | ||
| r2rml_config_file_output | File | ||
| execute_sparql_metadata_logs | File | ||
| execute_sparql_transform_logs | File |
Permalink:
https://w3id.org/cwl/view/git/7b8487b8333da4773f3790414b0863fe48d1fb0f/support/pharmgkb/graphdb-workflow/workflow.cwl
