Workflow: Add snv and indel bam-readcount files to a vcf

Fetched 2022-01-20 06:32:57 GMT
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Inputs

ID Type Title Doc
data_type https://w3id.org/cwl/view/git/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/data_type0f49ddad-0c7a-4a9b-b74a-56d685e17329
indel_bam_readcount_tsv File
vcf File
snv_bam_readcount_tsv File
sample_name String

Steps

ID Runs Label Doc
add_snv_bam_readcount_to_vcf
../tools/vcf_readcount_annotator.cwl (CommandLineTool)
add bam_readcount info to vcf
add_indel_bam_readcount_to_vcf
../tools/vcf_readcount_annotator.cwl (CommandLineTool)
add bam_readcount info to vcf

Outputs

ID Type Label Doc
annotated_bam_readcount_vcf File
Permalink: https://w3id.org/cwl/view/git/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/vcf_readcount_annotator.cwl