Explore Workflows

https://github.com/EBI-Metagenomics/workflow-is-cwl.git

Path: workflows/TranscriptsAnnotation-i5only-wf.cwl

Branch/Commit ID: assembly

https://github.com/NCI-GDC/vep-cwl.git

Path: v102/workflows/subworkflows/stage.cwl

Branch/Commit ID: master

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/QC/qc_workflow.cwl

Branch/Commit ID: master

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/fp_filter.cwl

Branch/Commit ID: master

Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step3-alpha-analysis.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-07-alpha-rarefaction.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/dynresreq-workflow-tooldefault.cwl

Branch/Commit ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 9c57dba

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/filter_vcf.cwl

Branch/Commit ID: master

The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/Barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: v0.0.5

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: downsample_and_recall