Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph fusion_workflow.cwl

Fusion workflow, runs STARFusion and Arriba

 https://github.com/bd2kgenomics/dockstore_workflow_fusion.git

Path: fusion_workflow.cwl

Branch/Commit ID: 1.0.0
workflow graph rhapsody_pipeline_2.0.cwl#VDJ_Analyze_Reads_TCR.cwl

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: VDJ_Analyze_Reads_TCR.cwl
workflow graph blast-scatter-flow-needs-work.cwl

https://github.com/betisb/inputparser.git

Path: cwl/blast-scatter-flow-needs-work.cwl

Branch/Commit ID: master
workflow graph wf-loadContents2.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/wf-loadContents2.cwl

Branch/Commit ID: master
workflow graph input_bam_processing_workflow.cwl

https://github.com/NCI-GDC/gdc-rnaseq-cwl.git

Path: rnaseq-star-align/subworkflows/preprocessing/input_bam_processing_workflow.cwl

Branch/Commit ID: master
workflow graph wf_trim_partial_and_map_se.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_partial_and_map_se.cwl

Branch/Commit ID: master
workflow graph echo-workflow.cwl

https://github.com/BiodataAnalysisGroup/intro-to-cwl-docker.git

Path: _includes/cwl/echo-workflow.cwl

Branch/Commit ID: gh-pages
workflow graph process VCF workflow

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: master
workflow graph panel of normals workflow

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: panel_of_normals/workflow.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: master