Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: master
workflow graph schemadef-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/schemadef-wf.cwl

Branch/Commit ID: master
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 0746e12
workflow graph bwa-alignment.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/bwa-alignment.cwl

Branch/Commit ID: master
workflow graph rnaseq-alignment-quantification

This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RNA-Seq/rnaseq-alignment-quantification.cwl

Branch/Commit ID: master
workflow graph wf-loadContents3.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/wf-loadContents3.cwl

Branch/Commit ID: main
workflow graph no-inputs-wf.cwl

Workflow without inputs.

 https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/no-inputs-wf.cwl

Branch/Commit ID: main
workflow graph exomeseq-gatk4-01-preprocessing.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl

Branch/Commit ID: gatk4-fixes
workflow graph assembly-1.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/conditionals/assembly/assembly-1.cwl

Branch/Commit ID: master
workflow graph maw.cwl

multiple mzml files, all with the same condition

https://github.com/zmahnoor14/MAW.git

Path: cwl/maw.cwl

Branch/Commit ID: main