Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph fastq_foreign_chromosome_cleanup

This workflow remove foreign chromosome comtamination from blastn TSV files

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/fastq-foreign-chromosome-cleanup.cwl

Branch/Commit ID: master
workflow graph sidearm.cwl

https://github.com/NCBI-Hackathons/Virus_Detection_SRA.git

Path: cwl/tools/sidearm.cwl

Branch/Commit ID: master
workflow graph cnv_gridss

CNV GRIDSS calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_gridss.cwl

Branch/Commit ID: 3bb03c9b
workflow graph kallisto.cwl

https://github.com/KevinSayers/kallisto-nf.git

Path: kallisto.cwl

Branch/Commit ID: master
workflow graph checker_workflow_wrapping_workflow.cwl

This demonstrates how to wrap a \"real\" workflow with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git

Path: checker_workflow_wrapping_workflow.cwl

Branch/Commit ID: develop
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 930a2cf
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: 0cf06f1
workflow graph wf_full_IDR_pipeline_2inputs_sample.cwl

This workflow essentially restructures the inputs before sending to wf_full_IDR_pipeline_2inputs.cwl

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_full_IDR_pipeline_2inputs_sample.cwl

Branch/Commit ID: master
workflow graph count-lines11-null-step-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines11-null-step-wf.cwl

Branch/Commit ID: master
workflow graph step-valuefrom4-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom4-wf.cwl

Branch/Commit ID: main