Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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AddBamStatsSomatic_v0_1_0.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/AddBamStatsSomatic_v0_1_0.cwl Branch/Commit ID: master |
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pdf2wordcloud.cwl
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https://github.com/wilke/CWL-Quick-Start.git
Path: CWL/Workflows/pdf2wordcloud.cwl Branch/Commit ID: master |
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umi duplex alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: master |
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ST520115.cwl
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https://github.com/Marco-Salvi/cwl-ro-crate.git
Path: ST520115.cwl Branch/Commit ID: main |
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example_workflow.cwl
Example CWL workflow that uses some advanced features |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/example_workflow.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 135976d |
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Detect Variants workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_nonhuman.cwl Branch/Commit ID: low-vaf |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: annotator_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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wf-alignment.cwl
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https://github.com/bcbio/test_bcbio_cwl.git
Path: somatic/somatic-workflow/wf-alignment.cwl Branch/Commit ID: master |
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qiime2 Deblur detect/correct sequence data
Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-03-deblur.cwl |
