- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
my_genomic_varients | File [VCF] | ||
my_reference_genome | File [FASTA] |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
construct_graph |
vg_construct.cwl
(CommandLineTool)
|
Construct a genome graph |
Includes both the reference sequences and alternative alleles |
generate_layout |
vg_view.cwl
(CommandLineTool)
|
Represent a genome graph in graphviz .dot format | |
render_pretty_picture_of_graph |
render_pdf_from_dot.cwl
(CommandLineTool)
|
Create a pretty PDF |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
genome_graph | File | ||
pretty_picture | File [format] |
Permalink:
https://w3id.org/cwl/view/git/92a900c345fd3f01604afa633c00810f59c4b413/2018_matsue_biohackathon/vg_basic_workflow.cwl