Explore Workflows

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines9-wf-noET.cwl

Branch/Commit ID: main

https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl

Branch/Commit ID: develop

https://github.com/briandoconnor/dockstore-workflow-md5sum.git

Path: md5sum.cwl

Branch/Commit ID: develop

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 0746e12

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/duplex_alignment.cwl

Branch/Commit ID: downsample_and_recall

https://github.com/mdaya/hla_la_typing.git

Path: HLA_LA_workflow_full.cwl

Branch/Commit ID: master

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v4-single.cwl

Branch/Commit ID: master

Computes the self-consistency ratio (see Gabe's protocols paper, or CHIP SEQ). Given two replicates, split each and perform IDR on each fragment. Returns the ratio of max(N1, N2)/min(N1, N2) where N1, N2 are the numbers of reproducible peaks found between each rep split pair.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_self_consistency_ratio.cwl

Branch/Commit ID: master

RNA-seq 02 trimming - reads: SE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl

Branch/Commit ID: master

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: master