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Showing results for "rnaseq" (Show all)
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trim-rnaseq-se.cwl
Runs RNA-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: cf84038de256c7ca98657ad81734d1aca1dad8c1 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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rnaseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/rnaseq-header.cwl Branch/Commit ID: 5e7385b8cfa4ddae822fff37b6bd22eb0370b389 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6 |
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samtoolsW.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: samtoolsW.cwl Branch/Commit ID: dccb12c85526c878ce3a489f9502350d187955a5 |
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rnaseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/rnaseq-header.cwl Branch/Commit ID: f2dd00833db8d458b1276373da019d73b7084fd6 |
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varscanW.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: varscanW.cwl Branch/Commit ID: dccb12c85526c878ce3a489f9502350d187955a5 |
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rnaseq-se-dutp.cwl
RNA-Seq basic analysis workflow for strand specific single-read experiment. |
https://github.com/datirium/workflows.git
Path: workflows/rnaseq-se-dutp.cwl Branch/Commit ID: e284e3f6dff25037b209895c52f2abd37a1ce1bf |
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rnaseq-se.cwl
RNA-Seq basic analysis workflow for single-read experiment. |
https://github.com/datirium/workflows.git
Path: workflows/rnaseq-se.cwl Branch/Commit ID: e284e3f6dff25037b209895c52f2abd37a1ce1bf |
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varscanW.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: varscanW.cwl Branch/Commit ID: 690ff2fa1ef356c42003e4b9986d39f4e44806a8 |
