Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Exome QC workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: qc/workflow_exome.cwl

Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
workflow graph EMG core analysis

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/emg-core-analysis-v4.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph Find Marker Alignments

https://github.com/ncbi-gpipe/pgap.git

Path: clade_assign/wf_find_marker_alignments.cwl

Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f
workflow graph Assign Clade

https://github.com/ncbi-gpipe/pgap.git

Path: clade_assign/wf_assign_clade.cwl

Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/workflow.cwl

Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
workflow graph Per-chromosome pindel

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: pindel/pindel_cat.cwl

Branch/Commit ID: 5a67e91727c8eb44afff27f9e4774eafef579c58
workflow graph TAP 0.9

todo

 https://github.com/MG-RAST/amplicon.git

Path: CWL/Workflows/relabel-and-merge.cwl

Branch/Commit ID: d86dea59873aecc378c5cff64f93cd72b46b59bd
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: workflows/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: edd5a6b2df3b4d0503e09fb17f5f1ef278594af3
workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA24385-sv/NA24385-sv-workflow/wf-alignment.cwl

Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5