Workflow: transform_pack.cwl#integrity.cwl
Fetched 2023-01-10 02:08:52 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bai | File | ||
| bam | File | ||
| job_uuid | String | ||
| input_state | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bai_ls_l |
transform_pack.cwl#ls_l.cwl
(CommandLineTool)
|
||
| bam_ls_l |
transform_pack.cwl#ls_l.cwl
(CommandLineTool)
|
||
| bai_md5sum |
transform_pack.cwl#md5sum.cwl
(CommandLineTool)
|
||
| bai_sha256 |
transform_pack.cwl#sha256sum.cwl
(CommandLineTool)
|
||
| bam_md5sum |
transform_pack.cwl#md5sum.cwl
(CommandLineTool)
|
||
| bam_sha256 |
transform_pack.cwl#sha256sum.cwl
(CommandLineTool)
|
||
| merge_sqlite |
transform_pack.cwl#merge_sqlite.cwl
(CommandLineTool)
|
||
| bai_integrity_to_db |
transform_pack.cwl#integrity_to_sqlite.cwl
(CommandLineTool)
|
||
| bam_integrity_to_db |
transform_pack.cwl#integrity_to_sqlite.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sqlite | File |
Permalink:
https://w3id.org/cwl/view/git/3cb464a3a5c39cc060cd23d9c60918bc9ffb169b/workflows/bamfastq_align/transform_pack.cwl?part=integrity.cwl
