Explore Workflows
View already parsed workflows here or click here to add your own
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trim-chipseq-pe.cwl
Runs ChIP-Seq BioWardrobe basic analysis with paired-end input data files. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-chipseq-pe.cwl Branch/Commit ID: 144eee15187c1a1145ce1ee0239da69059fd2752 |
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step-valuefrom2-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/step-valuefrom2-wf.cwl Branch/Commit ID: 4bf61c8a3d519eefd8b9271af73974bec62535ba |
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rnaseq-alignment-quantification
This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/RNA-Seq/rnaseq-alignment-quantification.cwl Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61 |
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tmb_workflow.cwl
Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/tmb_workflow.cwl Branch/Commit ID: dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2 |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 4c38ec433fd6fcbbe2ab659c97db729665864023 |
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count-lines1-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines1-wf.cwl Branch/Commit ID: b3639a4c5075abc562b7f9b816be0d4f7d711703 |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 37a3622d1d03812e4f868b5024c52607696bfb75 |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc |
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Seed Search Compartments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
