Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_ab_initio_training.cwl Branch/Commit ID: 2a81fcde75ca7665814c8de2210c7bc3121a08a3 |
|
|
|
Create Genomic Collection for Bacterial Pipeline
|
https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source.cwl Branch/Commit ID: 4ee5718856e3e890949ac48b9a30b68e11ccdd11 |
|
|
|
trim-rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-pe-dutp.cwl Branch/Commit ID: b25b17651171f32005e9d879a9a049382f044baf |
|
|
|
Running cellranger count and lineage inference
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: a9133c999502acf94b433af8d39897e6c2cdf65f |
|
|
|
Create Genomic Collection for Bacterial Pipeline
|
https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c |
|
|
|
process VCF workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580 |
|
|
|
Merge, annotate, and generate a TSV for SVs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095 |
|
|
|
assm_assm_blastn_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 68b828ac482956a03325623d817780986f34fb31 |
|
|
|
Subworkflow that runs cnvkit in single sample mode and returns a vcf file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095 |
|
|
|
kmer_cache_retrieve
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
