Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exomeseq-gatk4-preprocessing/v2.2.0
Whole Exome Sequence preprocessing using GATK4 - v2.2.0 |
https://github.com/bespin-workflows/exomeseq-gatk4.git
Path: exomeseq-gatk4-preprocessing.cwl Branch/Commit ID: develop |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 16dd8ca |
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hi-c-processing-bam.cwl
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https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-bam.cwl Branch/Commit ID: master |
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md5sum.cwl
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https://github.com/briandoconnor/dockstore-workflow-md5sum.git
Path: md5sum.cwl Branch/Commit ID: develop |
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wf_demultiplex_se.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_demultiplex_se.cwl Branch/Commit ID: master |
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workflow1.cwl
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https://github.com/petehague/Stoa.git
Path: actions/workflow1.cwl Branch/Commit ID: master |
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Running cellranger count and lineage inference
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: low-vaf |
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mutect parallel workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: mutect/workflow.cwl Branch/Commit ID: toil_compatibility |
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step-valuefrom5-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/step-valuefrom5-wf.cwl Branch/Commit ID: main |
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predict-workflow.cwl
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https://github.com/duke-gcb/imads-worker.git
Path: predict_service/predict-workflow.cwl Branch/Commit ID: master |
