Explore Workflows
View already parsed workflows here or click here to add your own
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Subworkflow for Annotation
\"Main workflow for Metagenome and Metatranscriptome Annotation related CWL file: ./Tools/00_fastp.cwl ./Tools/05_bwa_mem_index.cwl ./Tools/13_subread.cwl ./Workflow/annotation_sw.cwl ./Workflow/megahit_prodigal_sw.cwl ./Workflow/metagenomic_contig_mapping_sw.cwl\" |
Path: Workflow/main_w.cwl Branch/Commit ID: main |
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gk--store-xvs-row.cwl
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Path: cwl/gk--store-xvs-row.cwl Branch/Commit ID: master |
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Chipseq alignment with qc and creating homer tag directory
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Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: downsample_and_recall |
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trimming-and-qc-no-upload.cwl
Use fastq file as input and do trimming and quality check. Quality checks are done before trimming and after trimming. |
Path: workflow/trimming-and-qc/trimming-and-qc-no-upload/trimming-and-qc-no-upload.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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Path: workflows/emg-qc-paired.cwl Branch/Commit ID: master |
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sample-workflow.cwl
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Path: workflows/sample-workflow.cwl Branch/Commit ID: master |
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checker_workflow_wrapping_tool.cwl
This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results |
Path: checker_workflow_wrapping_tool.cwl Branch/Commit ID: 1.3.0 |
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hashsplitter-workflow.cwl
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Path: hashsplitter-workflow.cwl Branch/Commit ID: master |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
Path: workflows/rna-selector.cwl Branch/Commit ID: master |
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wf.cwl#main
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Path: wf.cwl Branch/Commit ID: master Packed ID: main |
