Workflow: cram_to_bam workflow

Fetched 2021-11-29 15:17:14 GMT
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Workflow as SVG
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  • Inputs/Outputs

Inputs

ID Type Title Doc
reference String
cram File

Steps

ID Runs Label Doc
cram_to_bam
cram_to_bam.cwl (CommandLineTool)
samtools view cram to bam
index_bam
../detect_variants/index_bam.cwl (CommandLineTool)
samtools index

Outputs

ID Type Label Doc
bam File
Permalink: https://w3id.org/cwl/view/git/d1ee6a2a323cee7e4af00c7e0b926c2192038e1d/cram_to_bam/workflow.cwl