Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	fastq2fasta.cwl	https://github.com/hpobio-lab/viral-analysis.git Path: cwl/fastq2fasta/fastq2fasta.cwl Branch/Commit ID: 1b1139d72e1bcc870424c87c7325e27ed79bc42c
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0
	SARS_psm_workflow.cwl	https://github.com/adamscharlotte/CWL-workflow.git Path: SARS_psm_workflow.cwl Branch/Commit ID: 90e89d0feac36a1cadbac0625a32ff6b1ee715fb
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c
	preprocess.cwl	https://github.com/inutano/covid19-phylogeny.git Path: cwl/preprocessing/preprocess.cwl Branch/Commit ID: 560dc8966fecb87d717bff4d0d0021c70a74e505
	exome alignment and germline variant detection, with optitype for HLA typing	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c
	exome alignment and germline variant detection, with optitype for HLA typing	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0