Workflow: Metrics sub-workflow
Fetched 2023-01-05 04:21:46 GMT
Verified with cwltool version 3.1.20221201130942
Align RNA-seq data for each sample using STAR.
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source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| basef | String | ||
| genome_fasta | File | ||
| picard_refflat | File | ||
| picard_riboints | File | ||
| aligned_reads_sam | File | ||
| output_metrics_filename | String (Optional) |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| combined_metrics_csv | File |
Permalink:
https://w3id.org/cwl/view/git/50e640ce16be4287b2e87381850a211ad3e70dc1/amp-rnaseq_reprocessing/amp-rnaseq_reprocess-workflow/wf-metrics.cwl
