Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Detect DoCM variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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scatterfail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatterfail.cwl Branch/Commit ID: 445f6b3a214f0c48317b25f7af278ae919ce5403 |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416 |
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cache_asnb_entries
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 001e133e0eedaf0dd8447e3f8b3cc898ec6e3e1d |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 611fc64473903d892eee21a2e6df5ddc2a33e58f |
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Running cellranger count and lineage inference
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 0514ffe248dd11068a3f2268bc67b6ce5ab051d2 |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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Alignment without BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
