Workflow: extract_readgroup_fastq_pe.cwl
Fetched 2023-01-09 00:30:47 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bioclient_config | File | ||
| readgroup_fastq_pe_uuid | https://w3id.org/cwl/view/git/0495e3095182b2e1b4d6274833b3d2ce30347a4e/tools/readgroup.yml#readgroup_fastq_pe_uuid |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| extract_forward_fastq |
../../tools/bio_client_download.cwl
(CommandLineTool)
|
||
| extract_reverse_fastq |
../../tools/bio_client_download.cwl
(CommandLineTool)
|
||
| emit_readgroup_fastq_pe_file |
../../tools/emit_readgroup_fastq_pe_file.cwl
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | https://w3id.org/cwl/view/git/0495e3095182b2e1b4d6274833b3d2ce30347a4e/tools/readgroup.yml#readgroup_fastq_pe_file |
Permalink:
https://w3id.org/cwl/view/git/0495e3095182b2e1b4d6274833b3d2ce30347a4e/workflows/bamfastq_align/extract_readgroup_fastq_pe.cwl
