Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exomeseq.cwl#exomeseq-03-organizedirectories.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc Packed ID: exomeseq-03-organizedirectories.cwl |
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step-valuefrom4-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/step-valuefrom4-wf.cwl Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37 |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561 |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: add6b7724698694e0e72d972e2e85e1ae4e67902 |
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FASTQ to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d |
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qiime2 Deblur detect/correct sequence data
Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc Packed ID: qiime2-03-deblur.cwl |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc Packed ID: qiime2-08-taxonomic-analysis.cwl |
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cram_to_bam workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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WGS QC workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: qc/workflow_wgs.cwl Branch/Commit ID: e497d1553498eb1c6daecf242ed4fa1375a892fd |
