Workflow: exomeseq.cwl#exomeseq-03-organizedirectories.cwl
Fetched 2026-01-27 16:49:22 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bams_final | File[] | ||
| hs_metrics | File[] | ||
| raw_variants | File[] | ||
| trim_reports | 858a12982ff4f9a5c992e1cff2aeb98a[] | ||
| fastqc_reports | 715e4651a1a5e5b43bb1c97e88c6ebe7[] | ||
| bams_markduplicates | File[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| org_bams_final |
exomeseq.cwl#files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory | |
| org_hs_metrics |
exomeseq.cwl#files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory | |
| org_raw_variants |
exomeseq.cwl#files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory | |
| org_trim_reports |
exomeseq.cwl#file-pairs-to-directory.cwl
(ExpressionTool)
|
Moves an array of File pairs into a named directory | |
| org_fastqc_reports |
exomeseq.cwl#file-pairs-to-directory.cwl
(ExpressionTool)
|
Moves an array of File pairs into a named directory | |
| org_bams_markduplicates |
exomeseq.cwl#files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| bams_final_dir | Directory | ||
| hs_metrics_dir | Directory | ||
| raw_variants_dir | Directory | ||
| trim_reports_dir | Directory | ||
| fastqc_reports_dir | Directory | ||
| bams_markduplicates_dir | Directory |
Permalink:
https://w3id.org/cwl/view/git/c15f7d33153a36bf08509c3ea046d17ebe07c6bc/packed/exomeseq.cwl?part=exomeseq-03-organizedirectories.cwl
