Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 2353ee2550529ca5b0705c94b32022a21713db18
	EMG pipeline v3.0 (single end version)	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 25129f55226dee595ef941edc24d3c44414e0523
	Trim and reformat reads (single and paired end version)	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: b6d3aaf3fa6695061208c6cdca3d7881cc45400d
	RNASelector as a CWL workflow https://doi.org/10.1007/s12275-011-1213-z	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: workflows/rna-selector.cwl Branch/Commit ID: ca6ca613f0d3728d9589a6ca6293e66dfde87bfb
	SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.	https://github.com/datirium/workflows.git Path: tools/soupx-subworkflow.cwl Branch/Commit ID: b1a5dabeeeb9079b30b2871edd9c9034a1e00c1c
	encode_mapping_workflow.cwl	https://github.com/encode-dcc/pipeline-container.git Path: local-workflows/encode_mapping_workflow.cwl Branch/Commit ID: 14405c3dd8d18f845b16b0e9872c7f3bf9b04736
	allele-vcf-rnaseq-se.cwl Allele specific RNA-Seq (using vcf) single-read workflow	https://github.com/datirium/workflows.git Path: workflows/allele-vcf-rnaseq-se.cwl Branch/Commit ID: cf107bc24a37883ef01b959fd89c19456aaecc02
	Functional analyis of sequences that match the 16S SSU	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: fa86fce570ab91c624272c8ffda672069d2f276d
	workflow.cwl	https://github.com/inab/ipc_workflows.git Path: exome/alignment/workflow.cwl Branch/Commit ID: fefede132f217184a25767fc4f42e2ae4606ff25
	EMG assembly for paired end Illumina	https://github.com/proteinswebteam/ebi-metagenomics-cwl.git Path: workflows/emg-assembly.cwl Branch/Commit ID: 9c57dba558a4e04a1884eae1df8431dcaccafc1e