Workflow: Resolve duplicate/overlapping calls in gVCFs
Fetched 2023-01-05 02:15:10 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Requires:
This workflow is Open Source and may be reused according to the terms of:
GNU Affero General Public License v3.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| refdirectory | Directory | Input directory of gVCFs |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step1 |
getdirs.cwl
(ExpressionTool)
|
Create list of gVCFs directories to clean | |
| step2 |
cleangvcf.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| out1 | Directory[] | Directory of clean gVCFs |
Permalink:
https://w3id.org/cwl/view/git/720b557e4a822da8c6139a1143e2c8ceaf2102ff/cwl-version/clean/cwl/tiling_clean_gvcf.cwl
