Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 8af4e2aabf43d5e3c7162efae4ad4649df5601e2 |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 5d5c4b4ed6d6de42eda2c68aefcf738c201517fb |
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Per-region pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 26806d99f8e2a241715fd081e712d4e3763db5b8 |
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gatk4.2.4.1_mutect2_workflow.cwl
GATK4.2.4.1 Mutect2 workflow |
https://github.com/nci-gdc/gatk4_mutect2_cwl.git
Path: subworkflows/gatk4.2.4.1_mutect2_workflow.cwl Branch/Commit ID: 02129060b3a92f90daf1328f21b9db49da7a5aca |
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BLAST against rRNA db
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 3bec7182e39cb4af10ed8920639adfa78a28ed81 |
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preparation_workflow.cwl
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https://github.com/nci-gdc/gatk4_mutect2_cwl.git
Path: utils-cwl/subworkflow/preparation_workflow.cwl Branch/Commit ID: 02129060b3a92f90daf1328f21b9db49da7a5aca |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 293dc7b83639d21a56efff2baf9dfe4e97b9b806 |
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count-lines13-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl Branch/Commit ID: 17268d1493d9e558113b2c35c0be6b3fb961b2a3 |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 6a456869b53513bff31fec02cc5ea3cc26fede36 |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 6a456869b53513bff31fec02cc5ea3cc26fede36 |
