Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph helloworld-htcondorcern.cwl

https://github.com/reanahub/reana-demo-helloworld.git

Path: workflow/cwl/helloworld-htcondorcern.cwl

Branch/Commit ID: 0c75cb4d4c572d68e2536d73d2d35bc16b48e6e5
workflow graph Subworkflow to allow calling cnvkit with cram instead of bam files

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_cnvkit.cwl

Branch/Commit ID: f42c889734c8f709ad2fd9090493bcaac8326c98
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71
workflow graph prefactor_calibrator.cwl

https://git.astron.nl/eosc/prefactor3-cwl.git

Path: workflows/prefactor_calibrator.cwl

Branch/Commit ID: 5f6da86a561d1b1c5b7ef56dc8bbbb1f1d7e9cbe
workflow graph exome alignment and somatic variant detection for cle purpose

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_cle.cwl

Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f
workflow graph Hello World

Outputs a message using echo

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/hello-workflow.cwl

Branch/Commit ID: 5bdb3d3dd47d8d1b3a1685220b4b6ce0f94c055e
workflow graph bam to trimmed fastqs and biscuit alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022
workflow graph exome alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome.cwl

Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022
workflow graph uncollapsed_bam_generation.cwl

https://github.com/msk-access/uncollapsed_bam_generation.git

Path: uncollapsed_bam_generation.cwl

Branch/Commit ID: e55c072d59343c55581261a8ff84ebed71404500
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022