Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
count-lines3-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines3-wf.cwl Branch/Commit ID: 0184e647cde1bc44279107d6df31b3ebb138769c |
|
|
|
varscan somatic workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
|
|
|
bgzip and index VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
|
|
|
Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0 |
|
|
|
Subworkflow to allow calling different SV callers which require bam files as inputs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 5cb188131f786ed33156e2f0e3dd63ab9c04245d |
|
|
|
Filter Protein Seeds I; Find ProSplign Alignments I
|
https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: f76a7f4a81ef4e60fa9a3964445162c92bf3d57c |
|
|
|
Unaligned BAM to BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
|
|
|
Varscan Workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379 |
|
|
|
module-6
|
https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-6.cwl Branch/Commit ID: f1d57f1774b959979ed590c89e11f05b2c639d7c |
|
|
|
Detect DoCM variants
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095 |
