Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb
	annotation.cwl	https://github.com/nigyta/bact_genome.git Path: cwl/workflow/annotation.cwl Branch/Commit ID: 6472a8e0e9b13eaf21177cc2c2886f0c303e0e16
	bam2fasta.cwl	https://github.com/arvados/bh20-seq-resource.git Path: workflows/fastq2fasta/bam2fasta.cwl Branch/Commit ID: 4f30e506055acb788a1ff1bbcb6359c4413a4eab
	assm_assm_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268
	bams2gvcf.woBQSR_male.cwl	https://github.com/ddbj/human-reseq.git Path: Workflows/bams2gvcf.woBQSR_male.cwl Branch/Commit ID: a1c9cd63c80122d6a831059cdb73ec9a9455af6f
	Transcriptome Read assignment This workflow download SRA samples and aligng them to a transcriptome fasta file	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/Annotation/transcriptome-read-assignment.cwl Branch/Commit ID: 192ed9291ee22c6514ea9ea3dd407eedc3c448c1
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: e7e888df9e7d44f036c4c7985e474016ee9e6525
	wffail.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/wffail.cwl Branch/Commit ID: 78fe9d41ee5a44f8725dfbd7028e4a5ee42949cf