Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph encode_mapping_workflow.cwl

https://github.com/ENCODE-DCC/pipeline-container.git

Path: local-workflows/encode_mapping_workflow.cwl

Branch/Commit ID: v1.0
workflow graph extract_gencoll_ids

https://github.com/ncbi/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: 9e43bc5cff985574e1f8135d4c50b5a347517c9e
workflow graph preprocess.cwl

https://github.com/NCBI-Hackathons/Epigenomics_CWL.git

Path: cwl/tools/preprocess.cwl

Branch/Commit ID: master
workflow graph step-valuefrom4-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/step-valuefrom4-wf.cwl

Branch/Commit ID: 57baec040c99d7edef8242ef51b5470b1c82d733
workflow graph scatter-valuefrom-wf4.cwl#main

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-valuefrom-wf4.cwl

Branch/Commit ID: main

Packed ID: main
workflow graph concatenate-flag.cwl

https://git.astron.nl/RD/VLBI-cwl.git

Path: workflows/concatenate-flag.cwl

Branch/Commit ID: master
workflow graph Genelists heatmap - peak and expression data visualized together

# Genelists heatmap - peak and expression data visualized together This visualization workflow takes as input 1 or more genelists derived from the DESeq and/or diffbind workflows along with user-selected samples and visualizes the ChIP/ATAC-Seq peak and/or RNA-Seq expression data visualized together in a single morpheus heatmap. ### __References__ - Morpheus, https://software.broadinstitute.org/morpheus

 https://github.com/datirium/workflows.git

Path: workflows/genelists-deseq-diffbind.cwl

Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895
workflow graph download-models.cwl

https://github.com/hubmapconsortium/hra-workflows.git

Path: download-models.cwl

Branch/Commit ID: 118a0e83052b6edfb72dd46bab8828314a0db34c
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: e3f18c61d1bbf65e40921dbd044369da4523ee3e
workflow graph exome alignment and somatic variant detection for cle purpose

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_cle.cwl

Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb