Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	WGS QC workflow mouse	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0
	bact_get_kmer_reference	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: b360e89d85d83ba3b863bf86074c0ec7e5c58f48
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: be465ad19b07378f3f863f2c4e0019b420c859f2
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: f18c1dce463509170ee3bf2844d5a3637ff706f5
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
	bam_readcount workflow	https://github.com/fgomez02/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529
	download_quality_control.cwl	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/sra/download_quality_control.cwl Branch/Commit ID: 4b75136d8aca10fec5bf008191ceaae92b7c46fb
	extract_readgroup_fastq_se_http.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroup_fastq_se_http.cwl Branch/Commit ID: b110a23e2efaaadfd4feca4f9e130946d1c5418d
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a
	process VCF workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0