Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph extract_gencoll_ids

https://github.com/ncbi/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: 94c97cfc95a5bf102a6f9206e045ea1afb768317
workflow graph exome alignment with qc, no bqsr, no verify_bam_id

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome_nonhuman.cwl

Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
workflow graph bacterial_orthology_cond

https://github.com/ncbi/pgap.git

Path: bacterial_orthology/wf_bacterial_orthology_conditional.cwl

Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/illumination_first_stitching.cwl

Branch/Commit ID: a55bd4705b4d8a22174ae3b52aad34d6f9028feb
workflow graph samtools_sort

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/samtools_sort.cwl

Branch/Commit ID: cebfad2f456d672052ef8c83f5ff1b4f3b4368e4
workflow graph final_filtering

Final filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/final_filtering.cwl

Branch/Commit ID: cebfad2f456d672052ef8c83f5ff1b4f3b4368e4
workflow graph CNV_pipeline

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/workflow.cwl

Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
workflow graph trimmed_fastq

Quality Control and Raw Data trimming

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: c3fd9c28e495c9bb7e3a8db53ed564b18d718b2a
workflow graph cnv_codex

CNV CODEX2 calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_codex.cwl

Branch/Commit ID: c84d205c8239b7dea9d1b49e3e166973c3ebcd66
workflow graph cnv_exomedepth

CNV ExomeDepth calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_exome_depth.cwl

Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f