Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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chunking-subwf-IPS.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/chunking-subwf-IPS.cwl Branch/Commit ID: master |
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exome alignment and tumor-only variant detection
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/exome.cwl Branch/Commit ID: No_filters_detect_variants |
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step_valuefrom5_wf_with_id_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step_valuefrom5_wf_with_id_v1_0.cwl Branch/Commit ID: main |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: f993cad |
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EMG assembly for paired end Illumina
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 3168316 |
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Unaligned BAM to BQSR and VCF
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https://github.com/MarkRobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: workflow.cwl_2 |
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samtools_sort
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/samtools_sort.cwl Branch/Commit ID: master |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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https://github.com/stain/workflow-is-cwl.git
Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: avoid-spaces |
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qc_workflow_wo_waltz.cwl
This workflow is intended to be used to test the QC module, without having to run the long waltz step |
https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/QC/qc_workflow_wo_waltz.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 0fed1c9 |