Workflow: chunking-subwf-IPS.cwl
Fetched 2024-05-11 19:05:51 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| name_ips | String | ||
| chunk_size | Integer | ||
| CGC_predicted_proteins | File | ||
| InterProScan_databases | String | ||
| InterProScan_applications | String[] | ||
| InterProScan_outputFormat | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| split_seqs |
../../tools/chunks/protein_chunker.cwl
(CommandLineTool)
|
split FAA by number of records |
based upon code by Maxim Scheremetjew, EMBL-EBI |
| combine_ips |
../../utils/concatenate.cwl
(CommandLineTool)
|
Redirecting Multiple Files Contain in a Single File |
The cat (short for concatenate) command is one of the most frequently used command in Linux/Unix like operating systems. cat command allows us to create single or multiple files, view contain of file, concatenate files and redirect output in terminal or files. |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| ips_result | File |
Permalink:
https://w3id.org/cwl/view/git/a83ee883bb3c7480010fa952939fac771491ddf4/workflows/subworkflows/chunking-subwf-IPS.cwl
