Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	fastqc-0-11-4-1.cwl	https://github.com/mr-c/4dn-dcic-pipelines-cwl.git Path: cwl_awsem_v1/fastqc-0-11-4-1.cwl Branch/Commit ID: 895a101d06c26f8c7f8a63545b2b74921b5f7526
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a
	transform_pack.cwl#conditional_bamindex.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: a57b8f0d8708078e87f13297e065d72db10e38a0 Packed ID: conditional_bamindex.cwl
	io-int-default-tool-and-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/io-int-default-tool-and-wf.cwl Branch/Commit ID: 4d06b9efd26c5813c13684ebcc95547bb75ddfcc
	count-lines1-wf.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/count-lines1-wf.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 9e5f228bc1a3d0dfe950b5d41d7e4319e834a6d4
	Merge, annotate, and generate a TSV for SVs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0