Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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gdc_dnaseq.aligned_reads.workflow.cwl
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![]() Path: workflows/gdc_dnaseq.aligned_reads.workflow.cwl Branch/Commit ID: 27a6d99cd517538eb345e2319d0903a864ea5965 |
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umi duplex alignment fastq workflow
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![]() Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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HBA_target.cwl
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![]() Path: workflows/HBA_target.cwl Branch/Commit ID: 1cf9e3a1f4e5d7d73fd783196b8e291a732c0a12 |
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ChIP-seq peak caller workflow MACS2 based
This workflow execute peak caller and QC for ChIP-seq using MACS2 |
![]() Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl Branch/Commit ID: f9447c1ac522e17531097c93a169a1a31453e874 |
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phase VCF
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![]() Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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![]() Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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Detect Variants workflow
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![]() Path: definitions/pipelines/detect_variants_nonhuman.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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Cell Ranger Aggregate
Cell Ranger Aggregate ===================== |
![]() Path: workflows/cellranger-aggr.cwl Branch/Commit ID: 9d5cbdd3ea0bb417518115d8092584254598a440 |
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FASTQ Vector Removal
This workflow convert fastq to multiple fasta files |
![]() Path: workflows/File-formats/fastq-to-splitted-fasta.cwl Branch/Commit ID: f9447c1ac522e17531097c93a169a1a31453e874 |
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STAR-Alignment-PE
This workflow aligns the fastq files using STAR for paired-end samples |
![]() Path: workflows/Alignments/star-alignment.cwl Branch/Commit ID: f9447c1ac522e17531097c93a169a1a31453e874 |