Workflow: workflow.cwl

Fetched 2021-01-14 00:48:43 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
PATH String[]
in_md5checksums File
in_trackList_json_bak File
in_tracks_conf File
in_tracks Directory
deepPATH_genomic_fasta String[]
in_names Directory
in_transcript_fasta File
in_protein_fasta File[]
in_genomic_gff File
deepPATH_analyses String[]
in_gc_bigwig File
in_gaps_bigwig File
in_genePrediction_readme File
in_seq Directory
in_assembly_readme File
in_check File
tree String[]
deepPATH_bigwig String[]
in_extract File
in_trackList_json File
deepPATH_apollo2_data String[]
in_genomic_fasta File
in_2bi File
in_cds_fasta File

Steps

ID Runs Label Doc
2blat
2blat/workflow.cwl (Workflow)
setup_folder
setup_folder.cwl (CommandLineTool)
creating directory tree
link_bigwig
link_bigwig.cwl (CommandLineTool)
2working_files
2other_species

Outputs

ID Type Label Doc
out_dummy File
Permalink: https://w3id.org/cwl/view/git/45bb8fc5cc5e5fee3f29099469621a53d084757d/flow_dispatch/workflow.cwl