Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Running cellranger count and lineage inference

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: low-vaf
workflow graph rw-flow.cwl

run multiple rw stages sequentially using earlier step output as later stage input_bam

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/rw-flow.cwl

Branch/Commit ID: master
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-noscreen-fastq.workflow.cwl

Branch/Commit ID: master
workflow graph regtools workflow

https://github.com/griffithlab/regtools-cwl.git

Path: regtools/workflow.cwl

Branch/Commit ID: master
workflow graph rna_prediction-sub-wf.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/rna_prediction-sub-wf.cwl

Branch/Commit ID: master
workflow graph per-sample.cwl

https://github.com/ddbj/jga-analysis.git

Path: per-sample/Workflows/per-sample.cwl

Branch/Commit ID: main
workflow graph qc_workflow.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow.cwl

Branch/Commit ID: 0.0.33_dmp
workflow graph mut.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut.cwl

Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b
workflow graph project-workflow.cwl

https://github.com/mskcc/argos-cwl.git

Path: project-workflow.cwl

Branch/Commit ID: master
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: ce04e2c