Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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kfdrc-jointgenotyping-refinement-workflow.cwl
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https://github.com/kids-first/kf-jointgenotyping-workflow.git
Path: workflow/kfdrc-jointgenotyping-refinement-workflow.cwl Branch/Commit ID: master |
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workflow1.cwl
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https://github.com/petehague/stoa.git
Path: actions/workflow1.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 0fed1c9 |
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word-mapping-test-files-wf.cwl#align-texts-wf.cwl
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https://github.com/kbnlresearch/ochre.git
Path: ochre/cwl/word-mapping-test-files-wf.cwl Branch/Commit ID: master Packed ID: align-texts-wf.cwl |
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contig construction and protein prediction
\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/01_megahit.cwl ./Tools/02_rename.cwl ./Tools/03_seqkit_stats.cwl ./Tools/04_prodigal.cwl\" |
https://github.com/RyoMameda/ComplexMicrobiome_GeneExpression_CWL.git
Path: Workflow/megahit_prodigal_sw.cwl Branch/Commit ID: main |
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QIIME2 Step 2 (DADA2 option)
QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 68e0cc1 |
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band.cwl
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https://github.com/alpha-unito/cwl-montage-workflow.git
Path: cwl/band.cwl Branch/Commit ID: main |
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wf.cwl#SplitAndSubsample.cwl
SplitAndSubsample splits, subsamples and formats read files to be deposited in QualityFilter. |
https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: main Packed ID: SplitAndSubsample.cwl |
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fillout_workflow.cwl
Workflow to run GetBaseCountsMultiSample fillout on a number of bam files with a single maf file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/fillout_workflow.cwl Branch/Commit ID: master |
