Workflow: binning.cwl
Fetched 2020-02-22 16:24:49 GMT
Verified with cwltool version 1.0.20180525185854
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This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/EBI-Metagenomics/CWL-binning/master/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| reference_fastas | File[] | ||
| contigs | File | ||
| reads | File[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bin_refinement |
../tools/metawrap_bin_refinement.cwl
(CommandLineTool)
|
metaWrap binning tool |
https://arxiv.org/abs/1604.03071 http://cab.spbu.ru/files/release3.12.0/manual.html#meta |
| metawrap_binning |
../tools/metawrap_binning.cwl
(CommandLineTool)
|
metaWrap binning tool |
https://arxiv.org/abs/1604.03071 http://cab.spbu.ru/files/release3.12.0/manual.html#meta |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| maxbin2_bins | Directory | ||
| concoct_bins | Directory | ||
| refined_bins | File[] | ||
| metabat2_bins | Directory |
Permalink:
https://w3id.org/cwl/view/git/56a9e2b08ecc2e3e86a90b7b9ab8195be74b12a2/workflows/binning.cwl
