Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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chksum_for_a_corrupted_xam_file.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_a_corrupted_xam_file.cwl Branch/Commit ID: 0.5.0 |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/Barski-lab/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: b8e28a017f7b1a2900ec0fd3b3549f123f0c91b4 |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-05-phylogeny.cwl |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-04-features.cwl |
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workflow.cwl
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https://github.com/morgantaschuk/one-workflow-many-ways.git
Path: cwl/workflow.cwl Branch/Commit ID: master |
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gather AML trio outputs
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: downsample_and_recall |
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phase VCF
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: No_filters_detect_variants |
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WF5201.cwl
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https://github.com/Marco-Salvi/cwl-test.git
Path: wf5201/WF5201.cwl Branch/Commit ID: main |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 0cf06f1 |
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Pipeline for converting dcc files output by GeoMX into sample by gene matrices
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https://github.com/hubmapconsortium/geomx-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 25f3f48 |
