Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Raw sequence data to BQSR

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_to_bqsr.cwl

Branch/Commit ID: downsample_and_recall
workflow graph tmb_workflow.cwl

Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file

https://github.com/mskcc/pluto-cwl.git

Path: cwl/tmb_workflow.cwl

Branch/Commit ID: master
workflow graph Hello World

Outputs a message using echo

 https://github.com/YangYang-Lcos/legacy.git

Path: workflows/hello/hell_17.cwl

Branch/Commit ID: master
workflow graph process_target_workflow.cwl

https://github.com/peijin94/LOFAR-Sun-tools.git

Path: utils/IM/LINC/lincSun/workflow/process_target_workflow.cwl

Branch/Commit ID: master
workflow graph Averages and aligns the unampped instances

First computes average per UniProt domain instance and then aligns all the average structures against core average structure. Outputs the alignment results along with the structures passing and failing the threshold for given Kpax score.

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/unmapped_unp_avg_align.cwl

Branch/Commit ID: main
workflow graph step2: trimming fastq files (paired-end)

multiple fastq files trimming process using fastp version 0.23.4 and scatter feature requirement

 https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/01_trimming_fastq_subworkflow_pe.cwl

Branch/Commit ID: main
workflow graph Dockstore.cwl

This is a description

 https://github.com/KTest-Organization/github-apps-workflow.git

Path: Dockstore.cwl

Branch/Commit ID: master
workflow graph scatter-wf4.cwl#main

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-wf4.cwl

Branch/Commit ID: main

Packed ID: main
workflow graph joint genotyping for trios or small cohorts

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/joint_genotype.cwl

Branch/Commit ID: low-vaf
workflow graph protein-search.cwl

https://github.com/agonopol/tara-ocean-analysis.git

Path: protein-search.cwl

Branch/Commit ID: master