- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
16S_matches | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
prune_tree |
../tools/qiime-filter_tree.cwl
(CommandLineTool)
|
||
extract_observations |
../tools/extract_observations.cwl
(CommandLineTool)
|
||
create_otu_text_summary |
../tools/qiime-biom-summarize_table.cwl
(CommandLineTool)
|
||
pick_closed_reference_otus |
../tools/qiime-pick_closed_reference_otus.cwl
(CommandLineTool)
|
||
convert_new_biom_to_classic |
../tools/qiime-biom-convert.cwl
(CommandLineTool)
|
||
convert_new_biom_to_old_biom |
../tools/qiime-biom-convert.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
tree | File | ||
biom_json | File | ||
otu_table_summary | File |
Permalink:
https://w3id.org/cwl/view/git/2104dc36c775de93de3fef77e7f82a19da76b6e3/workflows/16S_taxonomic_analysis.cwl