Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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gather AML trio outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec |
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Scattered variant calling workflow
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl Branch/Commit ID: 7521f8770b81d944aad3c1e0fd7ef5a886600190 |
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Report generation workflow
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/report-wf.cwl Branch/Commit ID: 7521f8770b81d944aad3c1e0fd7ef5a886600190 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416 |
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createindex.cwl
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https://github.com/yyoshiaki/VIRTUS.git
Path: workflow/createindex.cwl Branch/Commit ID: ec583ca708da941031e0b8088d49a419895619f5 |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec |
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bam2fasta.cwl
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https://github.com/arvados/bh20-seq-resource.git
Path: workflows/fastq2fasta/bam2fasta.cwl Branch/Commit ID: 556263eae40c2371f85b482494472e165ae4d1d5 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97 |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |
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WGS processing workflow for single sample
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl Branch/Commit ID: 35d7db9545d96c6f154aabf6c78a66e4dcede3b6 |
