Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph EMG assembly for paired end Illumina

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl

Branch/Commit ID: master
workflow graph targeted alignment and low vaf variant detection

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/targeted_low_vaf_pipeline.cwl

Branch/Commit ID: low-vaf
workflow graph Immunotherapy Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a
workflow graph kallisto.cwl

https://github.com/KevinSayers/kallisto-nf.git

Path: kallisto.cwl

Branch/Commit ID: master
workflow graph pipeline-pe-blacklist-removal.cwl

ATAC-seq pipeline - reads: PE - with blacklist removal

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: master
workflow graph qc_aggregator

https://github.com/msk-access/qc_generation.git

Path: access_qc__packed.cwl

Branch/Commit ID: develop

Packed ID: qc_aggregator.cwl
workflow graph count-lines9-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines9-wf-noET.cwl

Branch/Commit ID: 979083396fee912fca8ef778174216d317338a00
workflow graph run-openfoam.cwl

https://github.com/chgarth/cwl-openfoam.git

Path: cwl/run-openfoam.cwl

Branch/Commit ID: main
workflow graph cnv_manta

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl

Branch/Commit ID: 1.0.7
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: d4e5e53