Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph harmonization_bwa_mem_prod.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem_prod.cwl

Branch/Commit ID: 7f01768479e6a77a5caf6b3382174aa038ba05fc
workflow graph format_rrnas_from_seq_entry

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_format_rrnas_from_seq_entry.cwl

Branch/Commit ID: 97330968839983824a11ac32dff981d8ecb00955
workflow graph aws_freebayes.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/aws_freebayes.cwl

Branch/Commit ID: 7f01768479e6a77a5caf6b3382174aa038ba05fc
workflow graph phase VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/phase_vcf.cwl

Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022
workflow graph cache_asnb_entries

https://github.com/ncbi/pgap.git

Path: task_types/tt_cache_asnb_entries.cwl

Branch/Commit ID: 369afa7090a7480e6a0b144eff967a4a52b6fde2
workflow graph genomel_cohort_genotyping.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/genomel_cohort_genotyping.cwl

Branch/Commit ID: 7f01768479e6a77a5caf6b3382174aa038ba05fc
workflow graph Creates FASTA file from BED coordinates

This workflow creates FASTA file from BED coordinates

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/fasta-from-bed.cwl

Branch/Commit ID: 11f70a71cb68b3960c2d410ba1fdcd3b8a7e1419
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022
workflow graph samtools_view_sam2bam

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/samtools_view_sam2bam.cwl

Branch/Commit ID: 1a8c6bc41c83476a5496bbaca5c3d870cfd8c21e
workflow graph genomics-workspace.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace.cwl

Branch/Commit ID: 89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945