Workflow: capmq.cwl
Fetched 2023-01-11 21:21:24 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| library_cram | File | ||
| reference_fasta | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| capmq |
../tools/capmq.cwl
(CommandLineTool)
|
||
| cram_index |
../tools/samtools/samtools-index.cwl
(CommandLineTool)
|
||
| get_rg_values |
../tools/list_rgs.cwl
(CommandLineTool)
|
||
| verify_bam_id |
../tools/verifybamid2-rg.cwl
(CommandLineTool)
|
||
| combine_cram_index |
../expression-tools/combine_files.cwl
(ExpressionTool)
|
Step to put secondary input files in the same folder as a main file |
|
| get_capmq_ref_cache |
../tools/samtools_seq_cache_populate.cwl
(CommandLineTool)
|
||
| get_read_group_caps |
../tools/get_read_group_caps.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| capped_file | File |
Permalink:
https://w3id.org/cwl/view/git/8d9c9155a49045762cbf5a1e584fc20517b8be87/cwl/workflows/capmq.cwl
