Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git
Path: annotator_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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main.cwl
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https://github.com/kyusque/ajf_man2hybrid.git
Path: main.cwl Branch/Commit ID: main |
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mutect panel-of-normals workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/panel_of_normals.cwl Branch/Commit ID: 24e5290aec441665c6976ee3ee8ae3574c49c6b5 |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: No_filters_detect_variants |
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wgs alignment with qc
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: No_filters_detect_variants |
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Bisulfite alignment and QC
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: master |
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rhapsody_targeted_1.9-beta.cwl#SplitAndSubsample.cwl
SplitAndSubsample splits, subsamples and formats read files to be deposited in QualityFilter. |
https://github.com/longbow0/cwl.git
Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl Branch/Commit ID: master Packed ID: SplitAndSubsample.cwl |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: f6b5196 |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: master |
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count-lines15-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines15-wf.cwl Branch/Commit ID: master |
