Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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assemble.cwl
Assemble a set of reads using SKESA |
https://github.com/ncbi/pgap.git
Path: assemble.cwl Branch/Commit ID: master |
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Indices builder from GBOL RDF (TTL)
Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_indexbuilder.cwl Branch/Commit ID: master |
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stage_data_workflow.cwl
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https://github.com/nci-gdc/htseq-cwl.git
Path: workflows/subworkflows/stage_data_workflow.cwl Branch/Commit ID: master |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 16d1198871195e2229fd44dd0ad94a4ed6a87caf |
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m2a_without_transfer_learning.cwl
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https://github.com/chenlab-sj/M2A.git
Path: cwl/m2a_without_transfer_learning.cwl Branch/Commit ID: master |
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qc_workflow.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/QC/qc_workflow.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 3168316 |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: cc2f633532a6e0bc399b29180f25cc58ad5963d6 |
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Decompress
Decompress mate pair fastq files |
https://github.com/MG-RAST/amplicon.git
Path: CWL/Workflows/decompress_mate_pair.workflow.cwl Branch/Commit ID: master |
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step-valuefrom3-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl Branch/Commit ID: 478c2ffc09fb189c4f36ccb82aad945b3db5f9b3 |
