Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 2353ee2550529ca5b0705c94b32022a21713db18
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: e3f18c61d1bbf65e40921dbd044369da4523ee3e
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 369afa7090a7480e6a0b144eff967a4a52b6fde2
	workflow.cwl	https://github.com/Sage-Bionetworks-Challenges/Anti-PD1-DREAM-Infrastructure.git Path: workflow.cwl Branch/Commit ID: 2b25165f296b680194603676054eabd1d6df304c
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e
	wf_clipseqcore_pe_2barcodes.cwl Workflow for handling reads containing two barcodes. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs	https://github.com/YeoLab/eclip.git Path: cwl/wf_clipseqcore_pe_2barcodes.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
	kallisto_wf_se.cwl	https://github.com/pitagora-network/pitagora-cwl.git Path: workflows/kallisto/single_end/kallisto_wf_se.cwl Branch/Commit ID: 14c76e15665ef0566eae5c2be75dba7feb74a50b
	workflow.cwl	https://github.com/Andreja28/cloud-workflows.git Path: cwl/pak-fs/workflow.cwl Branch/Commit ID: b2d5b67c9bbc0cce97dcf65f3cdc8da2c156e145
	cnv_manta CNV Manta calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: d07f44fc5c253dc4044d86ea79ac6f9e03c01bfa