Workflow: fastq2fasta-create-bwaindex.cwl
Fetched 2023-01-11 17:37:37 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| threads | Integer | ||
| ref_fasta | File | ||
| fastq_forward | File | ||
| fastq_reverse | File (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bwa-index |
bwa-index.cwl
(CommandLineTool)
|
string |
|
| fastq2fasta |
fastq2fasta.cwl
(Workflow)
|
||
| samtools-faidx |
samtools-faidx.cwl
(CommandLineTool)
|
samtools sort, sort given bam file |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| out_fasta | File |
Permalink:
https://w3id.org/cwl/view/git/967e06fd4e5847e326a9b77ff3f0354aff69329a/cwl/fastq2fasta/fastq2fasta-create-bwaindex.cwl
