Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 4b5970dcf08bac2598e62ffd2673e67a25004c40
	wf52.cwl	https://github.com/NCATS-Tangerine/ros.git Path: ros/wf5/wf52.cwl Branch/Commit ID: c5973782bd2dac9530103295b2f9aad0778f366b
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 641bdeffd942f5121e19626a094c8633386ad546
	extract_readgroup_fastq_pe.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroup_fastq_pe.cwl Branch/Commit ID: 017c7572ea309c7d5b34bcc9bc1bdafbe47cb515
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023
	extract_capture_kit.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_capture_kit.cwl Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023
	merge_duprem_filter.cwl	https://github.com/CompEpigen/ChIPseq_workflows.git Path: CWL/workflow_modules/merge_duprem_filter.cwl Branch/Commit ID: 12aba268a55088a0350b7475a255a9713c78f8ff