Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71 |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 45d134ce3d436c53637a2d83755e9b4613267e9f |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 45d134ce3d436c53637a2d83755e9b4613267e9f |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325 |
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count-lines9-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl Branch/Commit ID: 4df56e95e6fceab69e677b539f3532cbf5946197 |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/Barski-lab/workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: e706ffe742cfdf713c4315ab2fb56d07f7e688cb |
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kmer_cache_store
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad |
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helloworld-nested.cwl
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https://github.com/audrium/reana-demo-scattered-helloworld.git
Path: workflow/cwl/helloworld-nested.cwl Branch/Commit ID: 7c5c9e3517cf6195c44dfab126184e6486d69239 |
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helloworld.cwl
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https://github.com/audrium/reana-demo-scattered-helloworld.git
Path: workflow/cwl/helloworld.cwl Branch/Commit ID: 7c5c9e3517cf6195c44dfab126184e6486d69239 |
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exome alignment with qc, no bqsr, no verify_bam_id
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |