Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pipeline-fastq2vcf-distr.cwl

DNAseq pipeline from fastq to vcf in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-fastq2vcf-distr.cwl

Branch/Commit ID: master
workflow graph example_workflow.cwl

https://github.com/Aeolic/example-workflow.git

Path: example_workflow.cwl

Branch/Commit ID: main
workflow graph mutect parallel workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: mutect/workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph SARS_psm_workflow.cwl

https://github.com/adamscharlotte/CWL-workflow.git

Path: SARS_psm_workflow.cwl

Branch/Commit ID: master
workflow graph bulk-atac-seq-pipeline.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: bulk-atac-seq-pipeline.cwl

Branch/Commit ID: 06aeffe
workflow graph Subworkflow to allow calling cnvkit with cram instead of bam files

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/cram_to_cnvkit.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph fillout_singleton_processing.cwl

https://github.com/mskcc/pluto-cwl.git

Path: cwl/fillout_singleton_processing.cwl

Branch/Commit ID: master
workflow graph bgzip and index VCF

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/bgzip_and_index.cwl

Branch/Commit ID: master
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 1.0.0
workflow graph Detect Variants workflow for WGS pipeline

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/detect_variants_wgs.cwl

Branch/Commit ID: downsample_and_recall