Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph qiime2 create phylogenetic tree

Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc

Packed ID: qiime2-05-phylogeny.cwl
workflow graph qiime2 create feature visual summaries

FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc

Packed ID: qiime2-04-features.cwl
workflow graph Exome QC workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: qc/workflow_exome.cwl

Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
workflow graph EMG core analysis

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/emg-core-analysis-v4.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph Find Marker Alignments

https://github.com/ncbi-gpipe/pgap.git

Path: clade_assign/wf_find_marker_alignments.cwl

Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f
workflow graph Assign Clade

https://github.com/ncbi-gpipe/pgap.git

Path: clade_assign/wf_assign_clade.cwl

Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/workflow.cwl

Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
workflow graph Per-chromosome pindel

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: pindel/pindel_cat.cwl

Branch/Commit ID: 5a67e91727c8eb44afff27f9e4774eafef579c58
workflow graph TAP 0.9

todo

 https://github.com/MG-RAST/amplicon.git

Path: CWL/Workflows/relabel-and-merge.cwl

Branch/Commit ID: d86dea59873aecc378c5cff64f93cd72b46b59bd