Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph main-somatic.cwl

https://github.com/FarahZKhan/bcbio_test_cwlprov.git

Path: somatic/somatic-workflow/main-somatic.cwl

Branch/Commit ID: master
workflow graph ACCESS_pipeline.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/ACCESS_pipeline.cwl

Branch/Commit ID: master
workflow graph Apply filters to VCF file

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/filter_vcf_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph SetParameterFromExternal

Receive parameter update (e.g., by querying an external source like a configuration or calibration database) or by expert input (e.g., by a member of a telescope team or a simulation pipeline expert).

 https://gitlab.desy.de/gernot.maier/cwlsandbox.git

Path: workflows/SetParameterFromExternal.cwl

Branch/Commit ID: main
workflow graph Detect Variants workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: master
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 930a2cf
workflow graph sequence (bam or fastqs) to trimmed fastqs and HISAT alignments

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: low-vaf
workflow graph bam_filtering

BAM filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl

Branch/Commit ID: 1.0.7
workflow graph preprocess.cwl

https://github.com/ncbi-hackathons/epigenomics_cwl.git

Path: cwl/tools/preprocess.cwl

Branch/Commit ID: master
workflow graph Resize sentinel2ard collection

Resize sentinel2ard collection

 https://github.com/EO-DataHub/eodh-training.git

Path: cwl/resize-sentinel2ard.cwl

Branch/Commit ID: main

Packed ID: resize-sentinel2ard