Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph EMG assembly for paired end Illumina

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: 5833078
workflow graph contig construction and protein prediction

\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/06_bwa_mem.cwl ./Tools/07_samtools_sort.cwl ./Tools/08_samtools_flagstat.cwl\"

https://github.com/RyoMameda/ComplexMicrobiome_GeneExpression_CWL.git

Path: Workflow/metagenomic_contig_mapping_sw.cwl

Branch/Commit ID: main
workflow graph STAR-RNA-Seq alignment and transcript/gene abundance workflow with Xenosplit

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq_star_fusion_with_xenosplit.cwl

Branch/Commit ID: master
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 3039744
workflow graph blast.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/blast.cwl

Branch/Commit ID: main
workflow graph md_launch_mutate_reduced.cwl

https://github.com/douglowe/biobb_hpc_cwl_md_list.git

Path: md_launch_mutate_reduced.cwl

Branch/Commit ID: main
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: 71d9c83
workflow graph bacterial_orthology

https://github.com/ncbi/pgap.git

Path: bacterial_orthology/wf_bacterial_orthology.cwl

Branch/Commit ID: test
workflow graph SetLightGuideEfficiency

Set light guide efficiency as function of wavelength and incident angle.

 https://github.com/gammasim/workflows.git

Path: workflows/SetLightGuideEfficiency.cwl

Branch/Commit ID: main
workflow graph KARIN_HR.cwl

https://github.com/CS-SI/chronos-demo.git

Path: cwl/KARIN_HR.cwl

Branch/Commit ID: f4dff46